Nextflow Modules
Showing module(s) with keyword "graft"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bamcmp | filter xenograft host graft contamination mouse | Bamcmp (Bam Compare) is a tool for assigning reads between a primary genome and a contamination genome. For instance, filtering out mouse reads from patient derived xenograft mouse models (PDX). |
| nf-core/gappa/examinegraft | sort graft phylogeny | Grafts query sequences from phylogenetic placement on the reference tree |
| nf-core/xengsort/index | index xenograft sorting cuckoo hash k-mer host graft | Build a bucketed 3-way Cuckoo hash table index from host and graft reference FASTA files for xenograft read sorting. |