nf-core/gappa/examinegraft @ 0.0.0-0c7146d
Summary
Grafts query sequences from phylogenetic placement on the reference tree
Get started
Add the following snippet to your workflow script to include this module.
include { GAPPA_EXAMINEGRAFT } from 'nf-core/gappa/examinegraft'
License
MIT License
Process
Name
|
GAPPA_EXAMINEGRAFT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
jplace
file
|
jplace file output from phylogenetic placement, e.g. EPA-NG, gzipped or not *.{jplace,jplace.gz}
|
Output
2 channels
#1
newick
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.newick
file
|
phylogenetic tree file in newick format *.newick
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gappa | Genesis Applications for Phylogenetic Placement Analysis | https://github.com/lczech/gappa |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:40:43 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgappa%2Fexaminegraft/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gappa/examinegraft/blobs/sha256:67c8f7dc65d5d1f1fd1eb2a928534ac053579dd7a6db38ef023abe696fc9d9d9 |
| Size | 2.2 KB |
| Checksum | sha256:67c8f7dc65d5d1f1fd1eb2a928534ac053579dd7a6db38ef023abe696fc9d9d9 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:40:43 (UTC) | 1 | 2.2 KB | - |