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Showing module(s) with keyword "alignment"

Module Keywords Description
nf-core/abra2 alignment realignment indels bam dna rna splice-junctions assembly Assembly Based ReAligner for next-generation sequencing data
nf-core/alignoth genomics alignment visualization pileup plotting Creating alignment plots from bam files
nf-core/amps malt MaltExtract HOPS amps alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome authentication damage edit distance post Post-processing visualisation Post-processing script of the MaltExtract component of the HOPS package
nf-core/ashlar image_processing alignment registration Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
nf-core/busco/phylogenomics phylogenies orthologs alignment Construct species phylogenies using BUSCO proteins
nf-core/bwafastalign/mem mem bwa bwafastalign alignment map fastq bam sam cram Performs fastq alignment to a fasta reference using BWA-FastAlign.
nf-core/bwa/mem mem bwa alignment map fastq bam sam Performs fastq alignment to a fasta reference using BWA
nf-core/bwamem2/mem mem bwa alignment map fastq bam sam Performs fastq alignment to a fasta reference using BWA
nf-core/bwamem3/mem mem bwa alignment map fastq bam sam Align fastq reads to a fasta reference using bwa-mem3
nf-core/bwameme/mem mem bwa bwamem2 bwameme alignment map fastq bam sam cram Performs fastq alignment to a fasta reference using BWA-MEME
nf-core/bwameth/align bwameth alignment 3-letter genome map methylation 5mC methylseq bisulphite bisulfite fastq bam Performs alignment of BS-Seq reads using bwameth
nf-core/cdhit/cdhit cluster protein alignment fasta Cluster protein sequences using sequence similarity
nf-core/cdhit/cdhitest cluster nucleotide alignment fasta Cluster nucleotide sequences using sequence similarity
nf-core/chromap/chromap chromap alignment map fastq bam sam hi-c atac-seq chip-seq trimming duplicate removal Performs preprocessing and alignment of chromatin fastq files to fasta reference files using chromap.
nf-core/clipkit alignment