Nextflow Registry | nf-core/busco/phylogenomics@0.0.0-0c7146d

nf-core/busco/phylogenomics @ 0.0.0-0c7146d

Construct species phylogenies using BUSCO proteins

phylogenies orthologs alignment

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Construct species phylogenies using BUSCO proteins

Add the following snippet to your workflow script to include this module.

include { BUSCO_PHYLOGENOMICS } from 'nf-core/busco/phylogenomics'

MIT License

Process

`Name`	`BUSCO_PHYLOGENOMICS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`busco` directory	BUSCO lineage specific output `*`

Output 3 channels

#1 gene_trees tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}/gene_trees_single_copy/` directory	Gene trees of BUSCO families `${prefix}/gene_trees_single_copy`

#2 supermatrix tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}/supermatrix/` directory	Concatenated supermatrix alignments of BUSCO families `${prefix}/supermatrix`

#3 versions_buscophylogenomics tuple

`${task.process}` string	The name of the process
`busco_phylogenomics` string	The name of the tool
`echo 20240919` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
busco	Construct species phylogenies using BUSCO proteins	https://github.com/jamiemcg/BUSCO_phylogenomics

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:28:38 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbusco%2Fphylogenomics/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/busco/phylogenomics/blobs/sha256:35432a71d0741227c90a8b6aeeb1c478cc1831f8f00b42ce0c8ca6d774b0be02
Size	2.6 KB
Checksum	sha256:35432a71d0741227c90a8b6aeeb1c478cc1831f8f00b42ce0c8ca6d774b0be02
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:28:38 (UTC)		1	2.6 KB	-