Nextflow Registry | nf-core/trycycler/cluster@0.0.0-0c7146d

nf-core/trycycler/cluster @ 0.0.0-0c7146d

Cluster contigs from multiple assemblies by similarity

cluster alignment fastq fasta genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @watsonar

Maintainers: @watsonar

Cluster contigs from multiple assemblies by similarity

Add the following snippet to your workflow script to include this module.

include { TRYCYCLER_CLUSTER } from 'nf-core/trycycler/cluster'

MIT License

Process

`Name`	`TRYCYCLER_CLUSTER`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`contigs` file	Contigs file
`reads` file	Long-read FASTQ file, optionally gzip compressed

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 cluster_dir tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*` directory	Output directory containing clustering results

Tool	Description	Homepage
trycycler	Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes	https://github.com/rrwick/Trycycler

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:20:15 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftrycycler%2Fcluster/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/trycycler/cluster/blobs/sha256:284b2e1dbe1b316bbe959b274a55961fdbef6c242ee1b3cc4959e86fb6ad7077
Size	2.9 KB
Checksum	sha256:284b2e1dbe1b316bbe959b274a55961fdbef6c242ee1b3cc4959e86fb6ad7077
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:20:15 (UTC)		1	2.9 KB	-