nf-core/tcoffee/alncompare @ 0.0.0-0c7146d
Summary
Compares 2 alternative MSAs to evaluate them.
Get started
Add the following snippet to your workflow script to include this module.
include { TCOFFEE_ALNCOMPARE } from 'nf-core/tcoffee/alncompare'
License
MIT License
Process
Name
|
TCOFFEE_ALNCOMPARE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', ... ] |
|---|---|
msa
file
|
fasta file containing the alignment to be evaluated. Can be gzipped or uncompressed *.{aln,fa,fasta,fas}{.gz,}
|
ref_msa
file
|
fasta file containing the reference alignment used for the evaluation. Can be gzipped or uncompressed *.{aln,fa,fasta,fas}{.gz,}
|
Output
3 channels
#1
scores
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.scores
file
|
a file containing the score of the alignment *.scores
|
#2
versions_pigz
tuple
${task.process}
string
|
The name of the process |
|---|---|
pigz
string
|
The name of the tool |
pigz --version 2>&1 | sed "s/^.*pigz[[:space:]]*//"
eval
|
The expression to obtain the version of the tool |
#3
versions_tcoffee
tuple
${task.process}
string
|
The name of the process |
|---|---|
tcoffee
string
|
The name of the tool |
t_coffee -version | awk '{gsub("Version_", ""); print \$3}'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| tcoffee | A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence | http://www.tcoffee.org/Projects/tcoffee/ |
| pigz | Parallel implementation of the gzip algorithm. | https://zlib.net/pigz/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:18:59 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftcoffee%2Falncompare/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/tcoffee/alncompare/blobs/sha256:b63c362468c6dbfda6f36f583c6484eb4f4f3f5595dd4482662e33b8017f9c81 |
| Size | 3.2 KB |
| Checksum | sha256:b63c362468c6dbfda6f36f583c6484eb4f4f3f5595dd4482662e33b8017f9c81 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:18:59 (UTC) | 1 | 3.2 KB | - |