Nextflow Registry | nf-core/skani/search@0.0.0-0c7146d

nf-core/skani/search @ 0.0.0-0c7146d

Memory-efficient ANI database queries with skani.

skani metagenomics genome alignment search

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @CarsonJM

Maintainers: @CarsonJM

Memory-efficient ANI database queries with skani.

Add the following snippet to your workflow script to include this module.

include { SKANI_SEARCH } from 'nf-core/skani/search'

MIT License

Process

`Name`	`SKANI_SEARCH`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`query` file	Input FASTA/skani sketch to search with. `*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`sketch_dir` directory	Directory containing the genome sketches and markers. `*`

Output 2 channels

#1 search tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}.tsv` file	TSV file containing ANI and AF as predicted by skani. `*.tsv`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
skani	skani is a fast and robust tool for calculating ANI between metagenome assembled genomes and contigs.	https://github.com/bluenote-1577/skani

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:14:21 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fskani%2Fsearch/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/skani/search/blobs/sha256:875e6669f5a90ccb65dcede3e9b94fb4a466b57fe03f6abe1883507136274c1e
Size	2.3 KB
Checksum	sha256:875e6669f5a90ccb65dcede3e9b94fb4a466b57fe03f6abe1883507136274c1e
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:14:21 (UTC)		1	2.3 KB	-