nf-core/segul/aligntrim @ 0.0.0-0c7146d
Summary
Trim multiple sequence alignments by filtering columns based on missing data proportion or parsimony informative sites using SEGUL.
Get started
Add the following snippet to your workflow script to include this module.
include { SEGUL_ALIGNTRIM } from 'nf-core/segul/aligntrim'
License
MIT License
Process
Name
|
SEGUL_ALIGNTRIM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information. e.g. |
|---|---|
aln
file
|
One or more multiple sequence alignment files. Files with non-standard extensions are automatically renamed to .fa for SEGUL compatibility. *.{fa,fas,fasta,nex,nexus,phy,phylip,aln,alnfaa,clipkit,trimal,msa}
|
Output
3 channels
#1
summary
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/trimming_summary.csv
file
|
CSV summary with per-alignment trimming statistics. *.csv
|
#2
trimmed
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/trimmed_alignments/*
file
|
Trimmed alignment files. *.{fas,nex,phy}
|
#3
versions_segul
tuple
${task.process}
string
|
The name of the process |
|---|---|
segul
string
|
The name of the tool |
segul --version | sed 's/segul //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| segul | An ultrafast and memory efficient tool for phylogenomics | https://www.segul.app |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:11:41 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsegul%2Faligntrim/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/segul/aligntrim/blobs/sha256:cd2703ff16884f82406004c998e76e15f11099414bb52a23dbc1b3b769a30214 |
| Size | 3.5 KB |
| Checksum | sha256:cd2703ff16884f82406004c998e76e15f11099414bb52a23dbc1b3b769a30214 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:11:41 (UTC) | 1 | 3.5 KB | - |