Nextflow Registry | nf-core/picard/crosscheckfingerprints@0.0.0-0c7146d

nf-core/picard/crosscheckfingerprints @ 0.0.0-0c7146d

Checks that all data in the set of input files appear to come from the same individual

alignment metrics statistics fingerprint bam

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @matthdsm

Maintainers: @matthdsm

Checks that all data in the set of input files appear to come from the same individual

Add the following snippet to your workflow script to include this module.

include { PICARD_CROSSCHECKFINGERPRINTS } from 'nf-core/picard/crosscheckfingerprints'

MIT License

Process

`Name`	`PICARD_CROSSCHECKFINGERPRINTS`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`input1` file	List containing 1 or more bam/vcf files or a file containing filepaths `*.{bam,vcf,vcf.gz,txt,fofn}`
`input1_index` file	List containing 1 or more bam/vcf files indexes `*.{bai,csi,crai,tbi}`
`input2` file	Optional list containing 1 or more bam/vcf files or a file containing filepaths `*.{bam,vcf,vcf.gz,txt,fofn}`
`input2_index` file	List containing 1 or more bam/vcf files indexes `*.{bai,csi,crai,tbi}`
`haplotype_map` file	Haplotype map file `*.{txt,vcf,vcf.gz}`

#2 tuple

`meta2` map	Groovy Map containing reference information e.g. [ id:'genome' ]
`fasta` file	Reference genome file `*.{fasta,fa,fasta.gz,fa.gz}`

Output 2 channels

#1 versions_picard tuple

`${task.process}` string	The process the versions were collected from
`picard` string	The tool name
`picard CrosscheckFingerprints --version 2>&1 \| sed -n 's/.*Version://p'` string	The command used to generate the version of the tool

#2 crosscheck_metrics tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.crosscheck_metrics.txt` file	Metrics created by crosscheckfingerprints `*.{crosscheck_metrics.txt}`

Tool	Description	Homepage
picard	A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.	https://broadinstitute.github.io/picard/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:02:41 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpicard%2Fcrosscheckfingerprints/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/picard/crosscheckfingerprints/blobs/sha256:1d57dba2af78b9ca5ac6a23e86c0b6c4752a1301998d81f0549ccdb5ffa5ceda
Size	3.1 KB
Checksum	sha256:1d57dba2af78b9ca5ac6a23e86c0b6c4752a1301998d81f0549ccdb5ffa5ceda
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:02:41 (UTC)		1	3.1 KB	-