Nextflow Registry | nf-core/maltextract@0.0.0-0c7146d

nf-core/maltextract @ 0.0.0-0c7146d

Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening

Add the following snippet to your workflow script to include this module.

include { MALTEXTRACT } from 'nf-core/maltextract'

MIT License

Process

`Name`	`MALTEXTRACT`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`rma6` file	RMA6 files from MALT `*.rma6`

`taxon_list` file	List of target taxa to evaluate `*.txt`

`ncbi_dir` directory	Directory containing NCBI taxonomy map and tre files `${ncbi_dir}/`

Output 2 channels

#1 results tuple

`meta` directory	Directory containing MaltExtract text results files `results/`
`results` directory	Directory containing MaltExtract text results files `results/`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
maltextract	Java tool to work with ancient metagenomics	https://github.com/rhuebler/hops

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:53:18 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmaltextract/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/maltextract/blobs/sha256:670572170f2c7caab7f4f859f9c5d99aa8701df8f24905975b889d6e77212b60
Size	2.3 KB
Checksum	sha256:670572170f2c7caab7f4f859f9c5d99aa8701df8f24905975b889d6e77212b60
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:53:18 (UTC)		1	2.3 KB	-