Nextflow Registry | nf-core/kma/index@0.0.0-0c7146d

nf-core/kma/index @ 0.0.0-0c7146d

This module wraps the index module of the KMA alignment tool.

alignment kma index database reads

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @krannich479

Maintainers: @krannich479

This module wraps the index module of the KMA alignment tool.

Add the following snippet to your workflow script to include this module.

include { KMA_INDEX } from 'nf-core/kma/index'

MIT License

Process

`Name`	`KMA_INDEX`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing reference information e.g. `[ id:'reference' ]`
`fasta` file	(Multi-)FASTA file of your database sequences. `*.{fa,fasta}`

Output 2 channels

#1 index tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'reference' ]`
`kmaindex` directory	Directory of KMA index files `*.{comp.b,length.b,name,seq.b}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
kma	Rapid and precise alignment of raw reads against redundant databases with KMA	https://bitbucket.org/genomicepidemiology/kma/src/master/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:50:59 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkma%2Findex/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kma/index/blobs/sha256:047d1c82bf0df51edfe2877d7ecab6d87bb62ab6974ccf972615bdb9e8e9c089
Size	2.5 KB
Checksum	sha256:047d1c82bf0df51edfe2877d7ecab6d87bb62ab6974ccf972615bdb9e8e9c089
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:50:59 (UTC)		1	2.5 KB	-