Nextflow Registry | nf-core/kalign/align@0.0.0-0c7146d

nf-core/kalign/align @ 0.0.0-0c7146d

Aligns sequences using kalign

alignment MSA genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @luisas @JoseEspinosa

Maintainers: @luisas @JoseEspinosa

Aligns sequences using kalign

Add the following snippet to your workflow script to include this module.

include { KALIGN_ALIGN } from 'nf-core/kalign/align'

MIT License

Process

`Name`	`KALIGN_ALIGN`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`fasta` file	Input sequences in FASTA format. May be gzipped or uncompressed. `*.{fa,fasta}{.gz,}`

`compress` boolean	Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is done using pigz, and is multithreaded.

Output 3 channels

#1 alignment tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test']`
`*.aln{.gz,}` file	Alignment file. May be gzipped or uncompressed, depending on if `compress` is set to `true` or `false`. `*.{aln}{.gz,}`

#2 versions_pigz tuple

`${task.process}` string	The name of the process
`pigz` string	The name of the tool
`pigz --version 2>&1 \| sed "s/^.pigz[[:space:]]//"` eval	The expression to obtain the version of the tool

#3 versions_kalign tuple

`${task.process}` string	The name of the process
`kalign` string	The name of the tool
`kalign -v \| sed "s/^.kalign[[:space:]]//"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
kalign	Kalign is a fast and accurate multiple sequence alignment algorithm.	https://msa.sbc.su.se/cgi-bin/msa.cgi

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:50:40 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkalign%2Falign/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kalign/align/blobs/sha256:834a8068082bce2c06f2923a916e7d09acfad8f6c5c85ded3199b852f11c0e3b
Size	2.7 KB
Checksum	sha256:834a8068082bce2c06f2923a916e7d09acfad8f6c5c85ded3199b852f11c0e3b
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:50:40 (UTC)		1	2.7 KB	-