Nextflow Registry | nf-core/hhsuite/hhsearch@0.0.0-0c7146d

nf-core/hhsuite/hhsearch @ 0.0.0-0c7146d

Sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs)

sensitive search HMM alignment

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs)

Add the following snippet to your workflow script to include this module.

include { HHSUITE_HHSEARCH } from 'nf-core/hhsuite/hhsearch'

MIT License

Process

`Name`	`HHSUITE_HHSEARCH`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`aln` file	Input multiple sequence alignment file in a2m or a3m format `*.{a2m,a2m.gz,a3m,a3m.gz}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`hh_db` directory	Input hhsuite formatted database `*/`

Output 2 channels

#1 hhr tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.hhr` file	Human-readable result file in a custom text format designed by the HH-suite `*.hhr`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
hhsuite	HH-suite3 for fast remote homology detection and deep protein annotation	https://github.com/soedinglab/hh-suite

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:47:09 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhhsuite%2Fhhsearch/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hhsuite/hhsearch/blobs/sha256:9235337a1812a19a2f6f8d2e18ca66f0d9c2227182c775892102579932803553
Size	2.7 KB
Checksum	sha256:9235337a1812a19a2f6f8d2e18ca66f0d9c2227182c775892102579932803553
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:47:09 (UTC)		1	2.7 KB	-