Nextflow Registry | nf-core/foldmason/msa2lddtreport@0.0.0-0c7146d

nf-core/foldmason/msa2lddtreport @ 0.0.0-0c7146d

Renders a visualization report using foldmason

alignment MSA genomics structure

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @luisas

Maintainers: @luisas

Renders a visualization report using foldmason

Add the following snippet to your workflow script to include this module.

include { FOLDMASON_MSA2LDDTREPORT } from 'nf-core/foldmason/msa2lddtreport'

MIT License

Process

`Name`	`FOLDMASON_MSA2LDDTREPORT`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`msa` file	Input alignment file. `*.{fa,fasta,aln}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`db` file	Input foldmason database. `*`

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`pdbs` file	Protein structures used for the visualization. `*.{pdb}`

#4 tuple

`meta4` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`tree` file	Guide tree used for the visualization . `*.{nwk,dnd}`

Output 2 channels

#1 html tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`${prefix}.html` file	HTML file with the foldmason visualization `*.{html}`

#2 versions_foldmason tuple

`${task.process}` string	The name of the process
`foldmason` string	The name of the tool
`foldmason version` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
foldmason	Multiple Protein Structure Alignment at Scale with FoldMason	https://github.com/steineggerlab/foldmason

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:39:49 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffoldmason%2Fmsa2lddtreport/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/foldmason/msa2lddtreport/blobs/sha256:cdc675f032f53cd1e0117e55ad8cf30380fab905158fcc112149677fe2666949
Size	2.6 KB
Checksum	sha256:cdc675f032f53cd1e0117e55ad8cf30380fab905158fcc112149677fe2666949
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:39:49 (UTC)		1	2.6 KB	-