nf-core/famsa/align @ 0.0.0-0c7146d
Summary
Aligns sequences using FAMSA
Get started
Add the following snippet to your workflow script to include this module.
include { FAMSA_ALIGN } from 'nf-core/famsa/align'
License
MIT License
Name
|
FAMSA_ALIGN |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Input sequences in FASTA format *.{fa,fasta}
|
meta2
map
|
Groovy Map containing tree information e.g. |
|---|---|
tree
file
|
Input guide tree in Newick format *.{dnd}
|
compress
boolean
|
Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is handled by passing '-gz' to FAMSA along with any other options specified in task.ext.args. |
|---|
alignment
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.aln{.gz,}
file
|
Alignment file, in FASTA format. May be gzipped or uncompressed, depending on if compress is set to true or false *.aln{.gz,}
|
versions_famsa
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
famsa
string
|
The tool name |
famsa -help 2>&1 | sed '2!d;s/ (.*//; s/^.* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| famsa | Algorithm for large-scale multiple sequence alignments | https://github.com/refresh-bio/FAMSA |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:37:39 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffamsa%2Falign/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/famsa/align/blobs/sha256:31f0dc286a745b05d3206fa49990636dd036428b007d42be0e44d347893f296d |
| Size | 2.7 KB |
| Checksum | sha256:31f0dc286a745b05d3206fa49990636dd036428b007d42be0e44d347893f296d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:37:39 (UTC) | 1 | 2.7 KB | - |