nf-core/ashlar @ 0.0.0-0c7146d
Summary
Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
Get started
Add the following snippet to your workflow script to include this module.
include { ASHLAR } from 'nf-core/ashlar'
License
MIT License
Process
Name
|
ASHLAR |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
images
file
|
Overlapping tile image data in formats from most commercial microscopes *.{ome.tiff,ome.tif,rcpnl,btf,nd2,tiff,tif,czi}
|
opt_dfp
file
|
Optional dark field image data |
|---|
opt_ffp
file
|
Optional flat field image data |
|---|
Output
2 channels
#1
tif
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.ome.tif
file
|
A pyramidal, tiled OME-TIFF file created from input images. *.ome.tif
|
#2
versions_ashlar
tuple
${task.process}
string
|
The name of the process |
|---|---|
ashlar
string
|
The name of the tool |
ashlar --version | sed 's/^.*ashlar //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ashlar | Alignment by Simultaneous Harmonization of Layer/Adjacency Registration | https://labsyspharm.github.io/ashlar/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:22:56 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fashlar/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ashlar/blobs/sha256:2768769dfad9ba9aef80c75470cdf91f5bda8d522ade589a50935f92fd58b2d9 |
| Size | 3.0 KB |
| Checksum | sha256:2768769dfad9ba9aef80c75470cdf91f5bda8d522ade589a50935f92fd58b2d9 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:22:56 (UTC) | 1 | 3.0 KB | - |