nf-core/amplify/predict @ 0.0.0-0c7146d
Summary
AMPlify is an attentive deep learning model for antimicrobial peptide prediction.
Get started
Add the following snippet to your workflow script to include this module.
include { AMPLIFY_PREDICT } from 'nf-core/amplify/predict'
License
MIT License
Process
Name
|
AMPLIFY_PREDICT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
faa
file
|
amino acid sequences fasta *.{fa,fa.gz,faa,faa.gz,fasta,fasta.gz}
|
model_dir
directory
|
Directory of where models are stored (optional) |
|---|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
amino acid sequences with prediction (AMP, non-AMP) and probability scores *.{tsv}
|
#2
versions_amplify
tuple
${task.process}
string
|
The name of the process |
|---|---|
AMPlify
string
|
The name of the tool |
AMPlify --help 2>&1 | sed -n 's/AMPlify v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| amplify | Attentive deep learning model for antimicrobial peptide prediction | https://github.com/bcgsc/AMPlify |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:21:51 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Famplify%2Fpredict/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/amplify/predict/blobs/sha256:f97f0deec5ec544ace859a043789855c990d1a1078493f617e33a9f3cfab9d98 |
| Size | 2.5 KB |
| Checksum | sha256:f97f0deec5ec544ace859a043789855c990d1a1078493f617e33a9f3cfab9d98 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:21:51 (UTC) | 1 | 2.5 KB | - |