Summary The Amazon Web Services (AWS) plugin provides support for AWS, including AWS Batch as a compute executor, S3 as a file system, and Fusion file system for high-performance data operations. ## Get Started To use this plugin, add it to your nextflow.config: ```groovy

plugins { id 'nf-amazon' } Configure your AWS credentials using environment variables, AWS CLI profiles, or IAM roles. Then set up the executor and work directory:groovy process.executor = 'awsbatch' process.queue = '' workDir = 's3:///work'

aws { region = 'us-east-1' batch { cliPath = '/home/ec2-user/miniconda/bin/aws' } } ## Examples ### Basic AWS Batch Configurationgroovy plugins { id 'nf-amazon' }

process.executor = 'awsbatch' process.queue = 'my-batch-queue' workDir = 's3://my-bucket/work'

aws { region = 'eu-west-1' batch { cliPath = '/home/ec2-user/miniconda/bin/aws' jobRole = 'arn:aws:iam::123456789:role/MyBatchJobRole' } } ### Using Fusion File Systemgroovy fusion { enabled = true }

wave { enabled = true }

process.executor = 'awsbatch' workDir = 's3://my-bucket/work' ### S3 Storage Optionsgroovy aws { client { maxConnections = 20 connectionTimeout = 10000 storageEncryption = 'AES256' } region = 'us-east-1' }