nf-core/xengsort/index @ 0.0.0-0c7146d
Summary
Fast lightweight accurate xenograft sorting
Get started
Add the following snippet to your workflow script to include this module.
include { XENGSORT_INDEX } from 'nf-core/xengsort/index'
License
MIT License
Process
Name
|
XENGSORT_INDEX |
|---|
Input
5 channels
host_fasta
file
|
Reference genome fasta file from host, compressed or uncompressed. |
|---|
graft_fasta
file
|
Reference genome fasta file from graft, compressed or uncompressed. |
|---|
index
string
|
File name prefix to store index files. |
|---|
nobjects
string
|
Number of k-mers that will be stored in the hash table. Underscore should be used, i.e for 1000000, it should be typed 1_000_000. |
|---|
mask
string
|
Gapped k-mer mask (quoted string like '###_###'). |
|---|
Output
3 channels
#1
hash
${index}.hash
file
|
File with index hash file. *hash
|
|---|
#2
info
${index}.info
file
|
File with index info file. *info
|
|---|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| xengsort | A fast xenograft read sorter based on space-efficient k-mer hashing | https://gitlab.com/genomeinformatics/xengsort |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:23:55 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fxengsort%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/xengsort/index/blobs/sha256:aa006c84f13e744d423804b0f172b6433f2e68a714ae1122b22d335288cc9f30 |
| Size | 2.3 KB |
| Checksum | sha256:aa006c84f13e744d423804b0f172b6433f2e68a714ae1122b22d335288cc9f30 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:23:55 (UTC) | 1 | 2.3 KB | - |