nf-core/windowmasker/mkcounts @ 0.0.0-0c7146d
Summary
A program to generate frequency counts of repetitive units.
Get started
Add the following snippet to your workflow script to include this module.
include { WINDOWMASKER_MKCOUNTS } from 'nf-core/windowmasker/mkcounts'
License
MIT License
Process
Name
|
WINDOWMASKER_MKCOUNTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
ref
file
|
An input nucleotide fasta file. |
Output
2 channels
#1
counts
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
A file containing frequency counts of repetitive units. *.txt
|
#2
versions_windowmasker
tuple
${task.process}
string
|
The name of the process |
|---|---|
windowmasker
string
|
The name of the tool |
windowmasker -version-full | head -n 1 | sed 's/^.*windowmasker. //; s/ .*\$//'
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| windowmasker | A program to mask highly repetitive and low complexity DNA sequences within a genome. | https://github.com/ncbi/ncbi-cxx-toolkit-public |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:23:35 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fwindowmasker%2Fmkcounts/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/windowmasker/mkcounts/blobs/sha256:9c0b378673a5a1403b8c6e87c008a36b7c6df48f4fa0c0d652da48ef6c8d3cd2 |
| Size | 2.4 KB |
| Checksum | sha256:9c0b378673a5a1403b8c6e87c008a36b7c6df48f4fa0c0d652da48ef6c8d3cd2 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:23:35 (UTC) | 1 | 2.4 KB | - |