nf-core/vt/decomposeblocksub @ 0.0.0-0c7146d
Summary
Decomposes biallelic block substitutions into its constituent SNPs.
Get started
Add the following snippet to your workflow script to include this module.
include { VT_DECOMPOSEBLOCKSUB } from 'nf-core/vt/decomposeblocksub'
License
MIT License
Process
Name
|
VT_DECOMPOSEBLOCKSUB |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
The VCF file to decompose *.vcf(.gz)?
|
index
file
|
The VCF file to decompose *.tbi
|
intervals
file
|
The intervals of the variants of decompose *.bed
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.vcf.gz
file
|
The decomposed VCF file *.vcf.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| vt | A tool set for short variant discovery in genetic sequence data | https://genome.sph.umich.edu/wiki/Vt |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | e2d3f0ddf4a74a4a9031f3caea2e9deaec5a440b |
| Release Date | 08 Apr 2026 19:23:14 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvt%2Fdecomposeblocksub/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vt/decomposeblocksub/blobs/sha256:13a0e42fcc2c22090b31c58d86df93333644f9617253a7cddf9dd0496ddd2457 |
| Size | 2.6 KB |
| Checksum | sha256:13a0e42fcc2c22090b31c58d86df93333644f9617253a7cddf9dd0496ddd2457 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-e2d3f0d | 28 Apr 2026 21:16:04 (UTC) | 1 | 2.6 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 19:23:14 (UTC) | 1 | 2.6 KB | - |