nf-core/vsearch/sort @ 0.0.0-0c7146d
Summary
Sort fasta entries by decreasing abundance (--sortbysize) or sequence length (--sortbylength).
Get started
Add the following snippet to your workflow script to include this module.
include { VSEARCH_SORT } from 'nf-core/vsearch/sort'
License
MIT License
Process
Name
|
VSEARCH_SORT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
Sequences to be sorted in FASTA format *.{fasta,fa,fasta.gz,fa.gz}
|
sort_arg
string
|
Argument to provide to sort algorithm. Sort by abundance with --sortbysize or by sequence length with --sortbylength. |
|---|
Output
2 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fasta
file
|
Sorted FASTA file *.{fasta}
|
#2
versions_vsearch
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
vsearch
string
|
The tool name |
vsearch --version 2>&1 | sed -n "1s/.*v\([0-9.]*\).*/\\1/p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vsearch | VSEARCH is a versatile open-source tool for microbiome analysis, including chimera detection, clustering, dereplication and rereplication, extraction, FASTA/FASTQ/SFF file processing, masking, orienting, pair-wise alignment, restriction site cutting, searching, shuffling, sorting, subsampling, and taxonomic classification of amplicon sequences for metagenomics, genomics, and population genetics. (USEARCH alternative) | https://github.com/torognes/vsearch |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:23:09 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvsearch%2Fsort/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vsearch/sort/blobs/sha256:3b06aca14f49fd80e5f63568795869afc42f478fa04e8644a3194e3e1a453b0d |
| Size | 2.8 KB |
| Checksum | sha256:3b06aca14f49fd80e5f63568795869afc42f478fa04e8644a3194e3e1a453b0d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:23:09 (UTC) | 1 | 2.8 KB | - |