nf-core/vrhyme/extractunbinned @ 0.0.0-0c7146d
Summary
Extracting sequences that were unbinnned by vRhyme into a FASTA file
Get started
Add the following snippet to your workflow script to include this module.
include { VRHYME_EXTRACTUNBINNED } from 'nf-core/vrhyme/extractunbinned'
License
MIT License
Process
Name
|
VRHYME_EXTRACTUNBINNED |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
membership
file
|
TSV file containing information regarding which bins input sequences were placed information *.{tsv}
|
#2
tuple
meta2
map
|
Groovy Map containing information related to the fasta e.g. [ id:'test' ] |
|---|---|
fasta
file
|
FASTA file containing contigs/scaffolds input into vRhyme *.{fasta,fna,fa,fasta.gz,fna.gz,fa.gz}
|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
unbinned_sequences
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.fasta
file
|
FASTA file containing unbinned sequences *_unbinned_sequences.fasta
|
| Tool | Description | Homepage |
|---|---|---|
| vrhyme | vRhyme functions by utilizing coverage variance comparisons and supervised machine learning classification of sequence features to construct viral metagenome-assembled genomes (vMAGs). | https://github.com/AnantharamanLab/vRhyme |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:22:55 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvrhyme%2Fextractunbinned/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vrhyme/extractunbinned/blobs/sha256:786dc304d3d8163b22700b50b60c38e5841cb676beaea21afa85fa9faf17912c |
| Size | 2.7 KB |
| Checksum | sha256:786dc304d3d8163b22700b50b60c38e5841cb676beaea21afa85fa9faf17912c |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:22:55 (UTC) | 1 | 2.7 KB | - |