nf-core/vg/deconstruct @ 0.0.0-0c7146d
Summary
Deconstruct snarls present in a variation graph in GFA format to variants in VCF format
Get started
Add the following snippet to your workflow script to include this module.
include { VG_DECONSTRUCT } from 'nf-core/vg/deconstruct'
License
MIT License
Process
Name
|
VG_DECONSTRUCT |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gfa
file
|
Variation graph in GFA format *.{gfa}
|
pb
file
|
Optional snarls file (from vg snarls) to avoid recomputing. Usually ends with "pb". See "vg snarls". *.{pb}
|
|---|
gbwt
file
|
Optional GBWT file (from vg gbwt) so to only consider alt traversals that correspond to GBWT threads FILE. *.{gbwt}
|
|---|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf
file
|
Variants in VCF format *.{vcf}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| vg | Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods. | https://github.com/vgteam/vg |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:22:34 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvg%2Fdeconstruct/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vg/deconstruct/blobs/sha256:342d69c8ed10fddb17f9a34349dd8535918905e1f25f126a24e0b7f9c41c1fd1 |
| Size | 2.4 KB |
| Checksum | sha256:342d69c8ed10fddb17f9a34349dd8535918905e1f25f126a24e0b7f9c41c1fd1 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:22:34 (UTC) | 1 | 2.4 KB | - |