nf-core/vembrane/table @ 0.0.0-0c7146d
Summary
Creates tabular (TSV) files from VCF/BCF data with flexible Python expressions
Get started
Add the following snippet to your workflow script to include this module.
include { VEMBRANE_TABLE } from 'nf-core/vembrane/table'
License
MIT License
Process
Name
|
VEMBRANE_TABLE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
VCF/BCF file to extract tabular data from *.{vcf,vcf.gz,bcf,bcf.gz}
|
expression
string
|
A comma-separated tuple of expressions that define the table column contents |
|---|
Output
2 channels
#1
table
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
TSV file containing tabular data from VCF/BCF *.tsv
|
#2
versions_vembrane
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
vembrane
string
|
The tool name |
vembrane --version | sed '1!d;s/.* //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vembrane | Filter VCF/BCF files with Python expressions | https://vembrane.github.io/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:22:26 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvembrane%2Ftable/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vembrane/table/blobs/sha256:f6007b04a0093b5eb838a36f3f4ff805fb6ab72cc37aa6da85b2f3bb1166c11c |
| Size | 2.8 KB |
| Checksum | sha256:f6007b04a0093b5eb838a36f3f4ff805fb6ab72cc37aa6da85b2f3bb1166c11c |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:22:26 (UTC) | 1 | 2.8 KB | - |