nf-core/vembrane/sort @ 0.0.0-0c7146d
Summary
Sort VCF/BCF files by custom Python expressions for variant prioritization
Get started
Add the following snippet to your workflow script to include this module.
include { VEMBRANE_SORT } from 'nf-core/vembrane/sort'
License
MIT License
Process
Name
|
VEMBRANE_SORT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
VCF/BCF file to sort *.{vcf,bcf,bcf.gz}
|
expression
string
|
Python expression (or tuple of expressions) returning orderable values to sort by |
|---|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.{vcf,bcf,bcf.gz}
file
|
Sorted VCF/BCF file *.{vcf,bcf,bcf.gz}
|
#2
versions_vembrane
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
vembrane
string
|
The tool name |
vembrane --version | sed '1!d;s/.* //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vembrane | Filter VCF/BCF files with Python expressions | https://vembrane.github.io/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:22:24 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvembrane%2Fsort/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vembrane/sort/blobs/sha256:27f307bf67139ad418ef8953e6137c9df3e530fdceedf6ae4d91f2a0a99f54c7 |
| Size | 3.0 KB |
| Checksum | sha256:27f307bf67139ad418ef8953e6137c9df3e530fdceedf6ae4d91f2a0a99f54c7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:22:24 (UTC) | 1 | 3.0 KB | - |