nf-core/vcflib/vcffixup @ 0.0.0-0c7146d
Summary
Generates a VCF stream where AC and NS have been generated for each record using sample genotypes.
Get started
Add the following snippet to your workflow script to include this module.
include { VCFLIB_VCFFIXUP } from 'nf-core/vcflib/vcffixup'
License
MIT License
Process
Name
|
VCFLIB_VCFFIXUP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
Compressed VCF file *.{.vcf.gz,vcf}
|
tbi
file
|
Index of VCF file *.vcf.gz.tbi
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf.gz
file
|
Compressed VCF file *.vcf.gz
|
#2
versions_vcflib
tuple
${task.process}
string
|
The name of the process |
|---|---|
vcflib
string
|
The name of the tool |
1.0.14
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vcflib | Command-line tools for manipulating VCF files | https://github.com/vcflib/vcflib |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:22:07 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvcflib%2Fvcffixup/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vcflib/vcffixup/blobs/sha256:3a02c610b18e82b5b8dc4459062e759bc3313e5496d79e5663cf6d7db22e3069 |
| Size | 2.4 KB |
| Checksum | sha256:3a02c610b18e82b5b8dc4459062e759bc3313e5496d79e5663cf6d7db22e3069 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:22:07 (UTC) | 1 | 2.4 KB | - |