Nextflow Registry | nf-core/vcfanno@0.0.0-0c7146d

nf-core/vcfanno @ 0.0.0-0c7146d

quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files

vcf bed annotate variant lua toml

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @projectoriented @matthdsm @nvnieuwk

Maintainers: @projectoriented @matthdsm @nvnieuwk

quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files

Add the following snippet to your workflow script to include this module.

include { VCFANNO } from 'nf-core/vcfanno'

MIT License

Process

`Name`	`VCFANNO`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`vcf` file	query VCF file `*.{vcf, vcf.gz}`
`tbi` file	tabix index file for the query VCF `*.tbi`
`specific_resources` map	A list of sample specific reference files defined in toml config, must also include indices if bgzipped.

`toml` file	configuration file with reference file basenames `*.toml`

`lua` file	Lua file for custom annotations `*.lua`

`resources` map	List of reference files defined in toml config, must also include indices if bgzipped.

Output 3 channels

#1 tbi tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `*.vcf.gz`
`*.vcf.gz.tbi` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `*.vcf.gz.tbi`

#2 vcf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `*.vcf.gz`
`*.vcf.gz` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `*.vcf.gz`

#3 versions_vcfanno tuple

`${task.process}` string	The name of the process
`vcfanno` string	The name of the tool
`vcfanno 2>&1 \| sed -n 's/.version $[0-9.]\+$./\1/p'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
vcfanno	annotate a VCF with other VCFs/BEDs/tabixed files	n/a

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:21:59 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvcfanno/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vcfanno/blobs/sha256:ed3c6d0b11df916e74d4e6f58ca5c2a38409036e29ee2201f684fe4f5cedd6db
Size	2.9 KB
Checksum	sha256:ed3c6d0b11df916e74d4e6f58ca5c2a38409036e29ee2201f684fe4f5cedd6db
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:21:59 (UTC)		1	2.9 KB	-