nf-core/umitools/prepareforrsem @ 0.0.0-0c7146d
Summary
Make the output from umi_tools dedup or group compatible with RSEM
Get started
Add the following snippet to your workflow script to include this module.
include { UMITOOLS_PREPAREFORRSEM } from 'nf-core/umitools/prepareforrsem'
License
MIT License
Process
Name
|
UMITOOLS_PREPAREFORRSEM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM file containing reads to be deduplicated via UMIs. *.{bam}
|
bai
file
|
BAM index files corresponding to the input BAM file. *.{bai}
|
Output
3 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Prepared BAM file. *.{bam}
|
#2
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
File with logging information *.{log}
|
#3
versions_umitools
tuple
${task.process}
string
|
The name of the process |
|---|---|
umitools
string
|
The name of the tool |
umi_tools --version | sed 's/UMI-tools version: //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| umi_tools | UMI-tools contains tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:20:49 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fumitools%2Fprepareforrsem/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/umitools/prepareforrsem/blobs/sha256:ed110e9b2454e9eea257a6cd57085d5f13f15405aed3f5d83dc2a05d4e20554e |
| Size | 2.6 KB |
| Checksum | sha256:ed110e9b2454e9eea257a6cd57085d5f13f15405aed3f5d83dc2a05d4e20554e |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:20:49 (UTC) | 1 | 2.6 KB | - |