nf-core/ultra/pipeline @ 0.0.0-0c7146d
Summary
uLTRA aligner - A wrapper around minimap2 to improve small exon detection
Get started
Add the following snippet to your workflow script to include this module.
include { ULTRA_PIPELINE } from 'nf-core/ultra/pipeline'
License
MIT License
Process
Name
|
ULTRA_PIPELINE |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
reads
file
|
A fasta or fastq file of reads to align *.{fasta,fastq}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
fasta file of reference genome *.fasta
|
#3
tuple
meta3
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
gtf
file
|
Genome annotation file *.gtf
|
Output
2 channels
#1
sam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.sam
file
|
The aligned reads in sam format *.sam
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| ultra | Splice aligner of long transcriptomic reads to genome. | https://github.com/ksahlin/uLTRA |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:20:38 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fultra%2Fpipeline/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ultra/pipeline/blobs/sha256:5be03c1d7da38b8c506f5e0d6b23e62e7d873a181efc510aac096103169083fe |
| Size | 2.7 KB |
| Checksum | sha256:5be03c1d7da38b8c506f5e0d6b23e62e7d873a181efc510aac096103169083fe |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:20:38 (UTC) | 1 | 2.7 KB | - |