nf-core/ultra/index @ 0.0.0-0c7146d
Summary
uLTRA aligner - A wrapper around minimap2 to improve small exon detection - Index gtf file for reads alignment
Get started
Add the following snippet to your workflow script to include this module.
include { ULTRA_INDEX } from 'nf-core/ultra/index'
License
MIT License
Process
Name
|
ULTRA_INDEX |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing genome information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
A fasta file of the genome to use as reference for mapping *.{fasta, fa}
|
#2
tuple
meta2
map
|
Groovy Map containing gtf information e.g. [ id:'test' ] |
|---|---|
gtf
file
|
An annotation file of the reference genome in GTF format *.gtf
|
Output
3 channels
#1
pickle
tuple
meta
map
|
Groovy Map containing genome information e.g. [ id:'test' ] |
|---|---|
*.pickle
file
|
Index file *.pickle
|
#2
database
tuple
meta
map
|
Groovy Map containing genome information e.g. [ id:'test' ] |
|---|---|
*.db
file
|
Index database *.db
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| ultra | Splice aligner of long transcriptomic reads to genome. | https://github.com/ksahlin/uLTRA |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:20:37 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fultra%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ultra/index/blobs/sha256:7b3d99351191526c4b6b0c3c27f773affedda95d52e5b7b5f231b524faff3860 |
| Size | 3.1 KB |
| Checksum | sha256:7b3d99351191526c4b6b0c3c27f773affedda95d52e5b7b5f231b524faff3860 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:20:37 (UTC) | 1 | 3.1 KB | - |