Nextflow Registry | nf-core/ucsc/bigwigaverageoverbed@0.0.0-0c7146d

nf-core/ucsc/bigwigaverageoverbed @ 0.0.0-0c7146d

compute average score of bigwig over bed file

bigwig bedGraph ucsc

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jianhong

Maintainers: @jianhong

compute average score of bigwig over bed file

Add the following snippet to your workflow script to include this module.

include { UCSC_BIGWIGAVERAGEOVERBED } from 'nf-core/ucsc/bigwigaverageoverbed'

MIT License

Process

`Name`	`UCSC_BIGWIGAVERAGEOVERBED`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bed` file	bed file `*.{bed}`

`bigwig` file	bigwig file `*.{bigwig,bw}`

Output 2 channels

#1 tab tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tab` file	tab file `*.{tab}`

#2 versions_ucsc tuple

`${task.process}` string	The name of the process
`ucsc` string	The name of the tool
`482` string	The expression to obtain the version of the tool

Tool	Description	Homepage
ucsc	Compute average score of big wig over each bed, which may have introns.	http://hgdownload.cse.ucsc.edu/admin/exe/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:20:28 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fucsc%2Fbigwigaverageoverbed/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ucsc/bigwigaverageoverbed/blobs/sha256:c772f7d3b159502bcf657a932b2a88aff04d0cccd473311b14b7f2f53f66acf1
Size	2.3 KB
Checksum	sha256:c772f7d3b159502bcf657a932b2a88aff04d0cccd473311b14b7f2f53f66acf1
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:20:28 (UTC)		1	2.3 KB	-