nf-core/ucsc/bedgraphtobigwig @ 0.0.0-0c7146d
Summary
Convert a bedGraph file to bigWig format.
Get started
Add the following snippet to your workflow script to include this module.
include { UCSC_BEDGRAPHTOBIGWIG } from 'nf-core/ucsc/bedgraphtobigwig'
License
MIT License
Process
Name
|
UCSC_BEDGRAPHTOBIGWIG |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bedgraph
file
|
bedGraph file *.{bedGraph}
|
sizes
file
|
chromosome sizes file *.{sizes}
|
|---|
Output
2 channels
#1
bigwig
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bigWig
file
|
bigWig file *.{bigWig}
|
#2
versions_ucsc
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
ucsc
string
|
The tool name |
482
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ucsc | Convert a bedGraph file to bigWig format. | http://hgdownload.cse.ucsc.edu/admin/exe/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:20:24 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fucsc%2Fbedgraphtobigwig/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ucsc/bedgraphtobigwig/blobs/sha256:9c159e9e50fd92cb4afa256441372a32c2aaa54f1fcd8b0577bdec28b75ca6d3 |
| Size | 2.2 KB |
| Checksum | sha256:9c159e9e50fd92cb4afa256441372a32c2aaa54f1fcd8b0577bdec28b75ca6d3 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:20:24 (UTC) | 1 | 2.2 KB | - |