Nextflow Registry | nf-core/tsebra@0.0.0-0c7146d

nf-core/tsebra @ 0.0.0-0c7146d

Transcript Selector for BRAKER TSEBRA combines gene predictions by selecting transcripts based on their extrisic evidence support

genomics transcript selector gene prediction evidence

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @GallVp

Maintainers: @GallVp

Transcript Selector for BRAKER TSEBRA combines gene predictions by selecting transcripts based on their extrisic evidence support

Add the following snippet to your workflow script to include this module.

include { TSEBRA } from 'nf-core/tsebra'

MIT License

Process

`Name`	`TSEBRA`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`gtfs` list	List of gene prediction files in gtf `*.gtf`

`hints_files` list	List of files containing extrinsic evidence in gff `*.gff`

`keep_gtfs` list	List of gene prediction files in gtf. These gene sets are used the same way as other inputs, but TSEBRA ensures that all transcripts from these gene sets are included in the output `*.gtf`

`config` file	Configuration file that sets the parameter for TSEBRA `*.cfg`

Output 3 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 tsebra_gtf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.gtf` file	Output file for the combined gene predictions in gtf `*.gtf`

#3 tsebra_scores tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.tsv` file	Transcript scores as a table `*.tsv`

Tool	Description	Homepage
tsebra	TSEBRA is a combiner tool that selects transcripts from gene predictions based on the support by extrisic evidence in form of introns and start/stop codons	https://github.com/Gaius-Augustus/TSEBRA

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:20:19 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftsebra/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/tsebra/blobs/sha256:eb4c87cc6d5419985efe33b6a310a9606ce38936dd92b75bb023ad1fa6176f5a
Size	3.1 KB
Checksum	sha256:eb4c87cc6d5419985efe33b6a310a9606ce38936dd92b75bb023ad1fa6176f5a
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:20:19 (UTC)		1	3.1 KB	-