Nextflow Registry | nf-core/trycycler/subsample@0.0.0-0c7146d

nf-core/trycycler/subsample @ 0.0.0-0c7146d

Subsample a long-read sequencing fastq file for multiple assemblies

subsample fastq genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @watsonar

Maintainers: @watsonar

Subsample a long-read sequencing fastq file for multiple assemblies

Add the following snippet to your workflow script to include this module.

include { TRYCYCLER_SUBSAMPLE } from 'nf-core/trycycler/subsample'

MIT License

Process

`Name`	`TRYCYCLER_SUBSAMPLE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`reads` file	Long-read FASTQ file, optionally gzip compressed

Output 2 channels

#1 subreads tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`/.fastq.gz` file	Subsampled read sets `*.{fastq.gz}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
trycycler	Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes	https://github.com/rrwick/Trycycler

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:20:17 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftrycycler%2Fsubsample/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/trycycler/subsample/blobs/sha256:556739fdfa4855946eac8676ce5e9fef3f6a84269bc2144dc0bb4a806755e199
Size	3.0 KB
Checksum	sha256:556739fdfa4855946eac8676ce5e9fef3f6a84269bc2144dc0bb4a806755e199
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:20:17 (UTC)		1	3.0 KB	-