nf-core/trinity @ 0.0.0-0c7146d
Summary
Assembles a de novo transcriptome from RNAseq reads
Get started
Add the following snippet to your workflow script to include this module.
include { TRINITY } from 'nf-core/trinity'
License
MIT License
Process
Name
|
TRINITY |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input fasta/fastq reads to be assembled into a transcriptome. *.{fa,fasta,fq,fastq}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
Log from trinity *.log
|
#2
transcript_fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fa.gz
file
|
de novo assembled transcripts fasta file compressed *.fa.gz
|
#3
versions_trinity
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
trinity
string
|
The tool name |
Trinity --version | grep 'Trinity version' | sed 's/.*Trinity-v//'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| trinity | Trinity assembles transcript sequences from Illumina RNA-Seq data. | https://github.com/trinityrnaseq/trinityrnaseq/wiki |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:20:04 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftrinity/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/trinity/blobs/sha256:90f7982f19792a590e4e424c638087bb836992f9dc854bb3bb84dd68567eb3e6 |
| Size | 3.1 KB |
| Checksum | sha256:90f7982f19792a590e4e424c638087bb836992f9dc854bb3bb84dd68567eb3e6 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:20:04 (UTC) | 1 | 3.1 KB | - |