nf-core/tidk/explore @ 0.0.0-0c7146d
Summary
tidk explore attempts to find the simple telomeric repeat unit in the genome provided. It will report this repeat in its canonical form (e.g. TTAGG -> AACCT).
Get started
Add the following snippet to your workflow script to include this module.
include { TIDK_EXPLORE } from 'nf-core/tidk/explore'
License
MIT License
Process
Name
|
TIDK_EXPLORE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
The input fasta file *.{fsa,fa,fasta}
|
Output
3 channels
#1
explore_tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tidk.explore.tsv
file
|
Telomeres and their frequencies in TSV format *.tidk.explore.tsv
|
#2
top_sequence
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.top.sequence.txt
file
|
The most frequent telomere sequence if one or more sequences are identified by the toolkit *.top.sequence.txt
|
#3
versions_tidk
tuple
${task.process}
string
|
The name of the process |
|---|---|
tidk
string
|
The name of the tool |
tidk --version | sed 's/tidk //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| tidk | tidk is a toolkit to identify and visualise telomeric repeats in genomes | https://github.com/tolkit/telomeric-identifier |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 8098ab9d800821e8b18e17fd515ed1e4ebc523f4 |
| Release Date | 08 Apr 2026 19:19:33 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftidk%2Fexplore/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/tidk/explore/blobs/sha256:1eab0f8210e56921cd43a002fc3b3d143d8f872be4bc06ba5b4d81c6c64c6b1b |
| Size | 2.6 KB |
| Checksum | sha256:1eab0f8210e56921cd43a002fc3b3d143d8f872be4bc06ba5b4d81c6c64c6b1b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:19:33 (UTC) | 1 | 2.6 KB | - |