nf-core/td2/longorfs @ 0.0.0-0c7146d
Summary
TD2 identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly
Get started
Add the following snippet to your workflow script to include this module.
include { TD2_LONGORFS } from 'nf-core/td2/longorfs'
License
MIT License
Process
Name
|
TD2_LONGORFS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Fasta file containing the target transcript sequences *.{fasta}
|
Output
2 channels
#1
orfs
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/longest_orfs.{cds,gff3,pep}
file
|
Files containing the longest ORFs predicted from the input transcript sequences ${prefix}/longest_orfs.{cds,gff3,pep}
|
#2
versions_td2
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
TD2.LongOrfs
string
|
The tool name |
1.0.6
string
|
The tool version |
| Tool | Description | Homepage |
|---|---|---|
| td2 | TD2 identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly | https://github.com/Markusjsommer/TD2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:19:12 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftd2%2Flongorfs/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/td2/longorfs/blobs/sha256:4676202031c87645871f8e5ab3f128c6ef7abc9c7ffa2ab45c7d8cc33e5f38ec |
| Size | 2.4 KB |
| Checksum | sha256:4676202031c87645871f8e5ab3f128c6ef7abc9c7ffa2ab45c7d8cc33e5f38ec |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:19:12 (UTC) | 1 | 2.4 KB | - |