Nextflow Registry | nf-core/tbprofiler/profile@0.0.0-0c7146d

nf-core/tbprofiler/profile @ 0.0.0-0c7146d

A tool to detect resistance and lineages of M. tuberculosis genomes

Mycobacterium tuberculosis resistance serotype

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @rpetit3

Maintainers: @rpetit3

A tool to detect resistance and lineages of M. tuberculosis genomes

Add the following snippet to your workflow script to include this module.

include { TBPROFILER_PROFILE } from 'nf-core/tbprofiler/profile'

MIT License

Process

`Name`	`TBPROFILER_PROFILE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`reads` file	FASTQ file `*.{fastq.gz,fq.gz}`

Output 6 channels

#1 bam tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bam/*.bam` file	BAM file with alignment details `*.bam`

#2 csv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`results/*.csv` file	Optional CSV formatted result file of resistance and strain type `*.csv`

#3 txt tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`results/*.txt` file	Optional text file of resistance and strain type `*.txt`

#4 vcf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`vcf/*.vcf.gz` file	VCF with variant info again reference genomes `*.vcf`

#5 json tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`results/*.json` file	JSON formatted result file of resistance and strain type `*.json`

#6 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
tbprofiler	Profiling tool for Mycobacterium tuberculosis to detect drug resistance and lineage from WGS data	https://github.com/jodyphelan/TBProfiler

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:18:55 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftbprofiler%2Fprofile/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/tbprofiler/profile/blobs/sha256:4fb7e8ac193d689c1c609cea6694c869bac1672a5aae6716b2a0e22079139f76
Size	2.7 KB
Checksum	sha256:4fb7e8ac193d689c1c609cea6694c869bac1672a5aae6716b2a0e22079139f76
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:18:55 (UTC)		1	2.7 KB	-