nf-core/tabix/bgziptabix @ 0.0.0-0c7146d
Summary
bgzip a sorted tab-delimited genome file and then create tabix index
Get started
Add the following snippet to your workflow script to include this module.
include { TABIX_BGZIPTABIX } from 'nf-core/tabix/bgziptabix'
License
MIT License
Process
Name
|
TABIX_BGZIPTABIX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
Sorted tab-delimited genome file |
Output
3 channels
#1
gz_index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gz
file
|
bgzipped tab-delimited genome file *.gz
|
*.{tbi,csi}
file
|
Tabix index file (either tbi or csi) *.{tbi,csi}
|
#2
versions_bgzip
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bgzip
string
|
The tool name |
bgzip --version | sed '1!d;s/.* //'
eval
|
The expression to obtain the version of the tool |
#3
versions_tabix
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
tabix
string
|
The tool name |
tabix -h 2>&1 | grep -oP 'Version:\s*\K[^\s]+'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| tabix | Generic indexer for TAB-delimited genome position files. | https://www.htslib.org/doc/tabix.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:18:36 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftabix%2Fbgziptabix/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/tabix/bgziptabix/blobs/sha256:22c12399934382c4c0a2aa2574164591b9b59dd141b9de533322af68ac35b626 |
| Size | 2.8 KB |
| Checksum | sha256:22c12399934382c4c0a2aa2574164591b9b59dd141b9de533322af68ac35b626 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:18:36 (UTC) | 1 | 2.8 KB | - |