Nextflow Registry | nf-core/sylphtax/taxprof@0.0.0-0c7146d

nf-core/sylphtax/taxprof @ 0.0.0-0c7146d

Incorporates taxonomy into sylph metagenomic classifier

taxonomy sylph metagenomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @sofstam

Maintainers: @sofstam

Incorporates taxonomy into sylph metagenomic classifier

Add the following snippet to your workflow script to include this module.

include { SYLPHTAX_TAXPROF } from 'nf-core/sylphtax/taxprof'

MIT License

Process

`Name`	`SYLPHTAX_TAXPROF`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`sylph_results` file	Output results from sylph classifier. The database file(s) used to create this file with sylph must be the same as those of the taxonomy input channel of this module. `*.{tsv}`

`taxonomy` file	A list of sylph-tax identifiers (e.g. GTDB_r220 or IMGVR_4.1). Multiple taxonomy metadata files can be input. Custom taxonomy files are also possible.

Output 2 channels

#1 taxprof_output tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.sylphmpa` file	A tab-separated file containing a metagenomic taxonomic profile generated by sylph-tax, including columns for lineage and taxid `*{.sylphmpa}`

#2 versions_sylphtax tuple

`${task.process}` string	The name of the process
`sylph-tax` string	The name of the tool
`sylph-tax --version 2>&1 \| tail -1` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
sylphtax	Integrating taxonomic information into the sylph metagenome profiler.	https://github.com/bluenote-1577/sylph-tax?tab=readme-ov-file

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:18:28 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsylphtax%2Ftaxprof/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sylphtax/taxprof/blobs/sha256:97bdea078345472715a9768f3bb7d4c80a6add5f1e9f8f70df7a46277a5356b1
Size	2.5 KB
Checksum	sha256:97bdea078345472715a9768f3bb7d4c80a6add5f1e9f8f70df7a46277a5356b1
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:18:28 (UTC)		1	2.5 KB	-