Nextflow Registry | nf-core/sylph/sketchgenomes@0.0.0-1d8acb2

nf-core/sylph/sketchgenomes @ 0.0.0-1d8acb2

Sylph profile command for taxonoming profiling of genomes

profile metagenomics sylph classification genomes sketch

Latest version: 0.0.0-1d8acb2

Total downloads: 1

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Sylph profile command for taxonoming profiling of genomes

Add the following snippet to your workflow script to include this module.

include { SYLPH_SKETCHGENOMES } from 'nf-core/sylph/sketchgenomes'

MIT License

Process

`Name`	`SYLPH_SKETCHGENOMES`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`fasta` file	List of reference genome FASTA file to convert to sylph database file `*.{fasta,fas,fa,fna}`

Output 2 channels

#1 syldb tuple

`meta` map	Groovy Map containing sample information
`*.syldb` file	Sylph database sketch file for profiling `*.syldb`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
sylph	Sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI.	https://github.com/bluenote-1577/sylph

Version	0.0.0-1d8acb2
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 10:26:06 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsylph%2Fsketchgenomes/0.0.0-1d8acb2/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sylph/sketchgenomes/blobs/sha256:b02a336089602a01da42b44ffbb937b0abce9315af5de3469e31b7c80102c09f
Size	2.3 KB
Checksum	sha256:b02a336089602a01da42b44ffbb937b0abce9315af5de3469e31b7c80102c09f
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-1d8acb2	08 Apr 2026 10:26:06 (UTC)		1	2.3 KB	-