Nextflow Registry | nf-core/sylph/sketch@0.0.0-0c7146d

nf-core/sylph/sketch @ 0.0.0-0c7146d

Sketching/indexing sequencing reads

sketch metagenomics sylph indexing

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jiahang1234 @sofstam

Maintainers: @sofstam

Sketching/indexing sequencing reads

Add the following snippet to your workflow script to include this module.

include { SYLPH_SKETCH } from 'nf-core/sylph/sketch'

MIT License

Process

`Name`	`SYLPH_SKETCH`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`reads` file	Input fastq files `*.{fq,fastq,fq.gz,fastq.gz}`

`reference` file	Reference genome file in FASTA format

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 sketch_fastq_genome tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`my_sketches/*.sylsp` map	Output sylph sketch files of input reads for profiling `my_sketches/*.sylsp`
`database.syldb` map	Output sylph database files for profiling against database `*.syldb`

Tool	Description	Homepage
sylph	Sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI.	https://github.com/bluenote-1577/sylph

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:17:52 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsylph%2Fsketch/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sylph/sketch/blobs/sha256:ccea8438d8eb0bf236d0bb7ecd1ec7f7eaff68c7043ddbbd4966608ec4fd3cff
Size	2.5 KB
Checksum	sha256:ccea8438d8eb0bf236d0bb7ecd1ec7f7eaff68c7043ddbbd4966608ec4fd3cff
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:17:52 (UTC)		1	2.5 KB	-