Nextflow Registry | nf-core/strdrop/call@0.0.0-0c7146d

nf-core/strdrop/call @ 0.0.0-0c7146d

Detect drops in STR coverage

str vcf lrs

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @fellen31

Maintainers: @fellen31

Detect drops in STR coverage

Add the following snippet to your workflow script to include this module.

include { STRDROP_CALL } from 'nf-core/strdrop/call'

MIT License

Process

`Name`	`STRDROP_CALL`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`vcf` file	Input STR call VCF file `*.{vcf,vcf.gz,bcf,bcf.gz}`

#2 tuple

`meta2` map	Groovy Map containing training set information e.g. `[ id:'sample1' ]`
`training_set_json` file	Input training set as json `*.json`

#3 tuple

`meta3` map	Groovy Map containing training set information e.g. `[ id:'sample1' ]`
`training_set_vcfs` file	Input training set as VCF files `*.{vcf,vcf.gz,bcf,bcf.gz}`

Output 2 channels

#1 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.vcf.gz` file	Output annotated VCF file `*.{vcf.gz}`

#2 versions_strdrop tuple

`${task.process}` string	The name of the process
`strdrop` string	The name of the tool
`strdrop --version \| sed 's/.* //g'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
strdrop	Flag STR coverage drops in LRS data	https://github.com/dnil/strdrop

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:16:56 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fstrdrop%2Fcall/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/strdrop/call/blobs/sha256:5dc6f92637cc20bea2d9cd87455711f1544e468f92ae3e3beb74fbf452da56f5
Size	2.9 KB
Checksum	sha256:5dc6f92637cc20bea2d9cd87455711f1544e468f92ae3e3beb74fbf452da56f5
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:16:56 (UTC)		1	2.9 KB	-