nf-core/stecfinder @ 0.0.0-0c7146d
Summary
Serotype STEC samples from paired-end reads or assemblies
Get started
Add the following snippet to your workflow script to include this module.
include { STECFINDER } from 'nf-core/stecfinder'
License
MIT License
Process
Name
|
STECFINDER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
seqs
file
|
Illumina paired-end reads or an assembly *.{fastq.gz,fasta.gz,fna.gz}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
A tab-delimited report of results *.tsv
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| stecfinder | Cluster informed Shigatoxin producing E. coli (STEC) serotyping tool from Illumina reads and assemblies | https://github.com/LanLab/STECFinder |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:16:48 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fstecfinder/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/stecfinder/blobs/sha256:1628d74f4c131ead028a1b483b287ce0fc4766ae189996f4e30e69f3c08dd224 |
| Size | 2.4 KB |
| Checksum | sha256:1628d74f4c131ead028a1b483b287ce0fc4766ae189996f4e30e69f3c08dd224 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:16:48 (UTC) | 1 | 2.4 KB | - |