Nextflow Registry | nf-core/starfusion/detect@0.0.0-0c7146d

nf-core/starfusion/detect @ 0.0.0-0c7146d

Fast and Accurate Fusion Transcript Detection from RNA-Seq

Fusion starfusion RNA-Seq detect

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @praveenraj2018

Fast and Accurate Fusion Transcript Detection from RNA-Seq

Add the following snippet to your workflow script to include this module.

include { STARFUSION_DETECT } from 'nf-core/starfusion/detect'

MIT License

Process

`Name`	`STARFUSION_DETECT`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`reads` file	Input fastq files `*.{fq,fastq,fq.gz,fastq.gz}`
`junction` file	Chimeric junction output from STAR aligner `*.{out.junction}`

`reference` directory	STAR-fusion reference genome lib folder `*genome_lib_build_dir`

Output 4 channels

#1 fusions tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.fusion_predictions.tsv` file	Fusion events from STAR-fusion `*.{fusion_predictions.tsv}`

#2 abridged tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.abridged.tsv` file	Abridged version of fusion events from STAR-fusion `*.{fusion.abridged.tsv}`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

#4 coding_effect tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.coding_effect.tsv` file	Fusion events with their coding effect from STAR-fusion `*.{coding_effect.tsv}`

Tool	Description	Homepage
star-fusion	Fast and Accurate Fusion Transcript Detection from RNA-Seq	https://github.com/STAR-Fusion/STAR-Fusion

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:16:47 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fstarfusion%2Fdetect/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/starfusion/detect/blobs/sha256:ceeb2545db4e7b4b382b7423e9660e640f5b11980b0775324bfad607f8f5d5cd
Size	3.7 KB
Checksum	sha256:ceeb2545db4e7b4b382b7423e9660e640f5b11980b0775324bfad607f8f5d5cd
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:16:47 (UTC)		1	3.7 KB	-