nf-core/sourmash/sketch @ 0.0.0-0c7146d
Summary
Create a signature (a group of FracMinHash sketches) of a sequence using sourmash
Get started
Add the following snippet to your workflow script to include this module.
include { SOURMASH_SKETCH } from 'nf-core/sourmash/sketch'
License
MIT License
Process
Name
|
SOURMASH_SKETCH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
library
file
|
One or more FASTA or FASTQ file(s) containing (genomic, transcriptomic, or proteomic) sequence data *.{fna,fa,fasta,fastq,fq,faa}.gz
|
Output
2 channels
#1
signatures
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sig
file
|
FracMinHash signature of the given sequence *.{sig}
|
#2
versions_sourmash
tuple
${task.process}
string
|
The name of the process |
|---|---|
sourmash
string
|
The name of the tool |
sourmash --version 2>&1 | sed 's/^sourmash //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sourmash | Compute and compare FracMinHash signatures for DNA and protein data sets. | https://sourmash.readthedocs.io/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:15:53 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsourmash%2Fsketch/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sourmash/sketch/blobs/sha256:ca2fa99f601d528902bf7ff1b6346676606f62ecfd93eb9944caef5d699738ac |
| Size | 2.4 KB |
| Checksum | sha256:ca2fa99f601d528902bf7ff1b6346676606f62ecfd93eb9944caef5d699738ac |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:15:53 (UTC) | 1 | 2.4 KB | - |