Nextflow Registry | nf-core/sourmash/compare@0.0.0-0c7146d

nf-core/sourmash/compare @ 0.0.0-0c7146d

Compare many FracMinHash signatures generated by sourmash sketch.

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @taylorreiter

Maintainers: @taylorreiter

Compare many FracMinHash signatures generated by sourmash sketch.

Add the following snippet to your workflow script to include this module.

include { SOURMASH_COMPARE } from 'nf-core/sourmash/compare'

MIT License

Process

`Name`	`SOURMASH_COMPARE`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`signatures` file	Files containing signatures (hash sketches) of samples `*.{sig}`

`file_list` file	An optional file specifying a list of file paths that should be appended to the input signatures.

`save_numpy_matrix` boolean	If true, output will contain a (dis)similarity matrix numpy binary format. At least one of save_numpy_matrix or save_csv is required.

`save_csv` boolean	If true, output will contain a (dis)similarity matrix in CSV format At least one of save_numpy_matrix or save_csv is required.

Output 4 channels

#1 csv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*comp.csv` file	An optional (dis)similarity matrix in CSV format `*.comp.csv`

#2 labels tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*comp.npy.labels.txt` file	A text file that specifies the labels in the output numpy_matrix `*.comp.labels.txt`

#3 matrix tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*comp.npy` file	An optional (dis)similarity matrix numpy binary format `*.comp`

#4 versions_sourmash tuple

`${task.process}` string	The name of the process
`sourmash` string	The name of the tool
`sourmash --version 2>&1 \| sed 's/^sourmash //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
sourmash	Compute and compare FracMinHash signatures for DNA and protein data sets.	https://sourmash.readthedocs.io/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:15:47 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsourmash%2Fcompare/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sourmash/compare/blobs/sha256:42a1110cb646ddd86ac21ce9532e7eb72c5474f7312f6ad56389a8ded4d747a7
Size	3.1 KB
Checksum	sha256:42a1110cb646ddd86ac21ce9532e7eb72c5474f7312f6ad56389a8ded4d747a7
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:15:47 (UTC)		1	3.1 KB	-