nf-core/sourmash/compare @ 0.0.0-0c7146d
Summary
Compare many FracMinHash signatures generated by sourmash sketch.
Get started
Add the following snippet to your workflow script to include this module.
include { SOURMASH_COMPARE } from 'nf-core/sourmash/compare'
License
MIT License
Name
|
SOURMASH_COMPARE |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
signatures
file
|
Files containing signatures (hash sketches) of samples *.{sig}
|
file_list
file
|
An optional file specifying a list of file paths that should be appended to the input signatures. |
|---|
save_numpy_matrix
boolean
|
If true, output will contain a (dis)similarity matrix numpy binary format. At least one of save_numpy_matrix or save_csv is required. |
|---|
save_csv
boolean
|
If true, output will contain a (dis)similarity matrix in CSV format At least one of save_numpy_matrix or save_csv is required. |
|---|
csv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*comp.csv
file
|
An optional (dis)similarity matrix in CSV format *.comp.csv
|
labels
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*comp.npy.labels.txt
file
|
A text file that specifies the labels in the output numpy_matrix *.comp.labels.txt
|
matrix
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*comp.npy
file
|
An optional (dis)similarity matrix numpy binary format *.comp
|
versions_sourmash
tuple
${task.process}
string
|
The name of the process |
|---|---|
sourmash
string
|
The name of the tool |
sourmash --version 2>&1 | sed 's/^sourmash //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sourmash | Compute and compare FracMinHash signatures for DNA and protein data sets. | https://sourmash.readthedocs.io/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:15:47 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsourmash%2Fcompare/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sourmash/compare/blobs/sha256:42a1110cb646ddd86ac21ce9532e7eb72c5474f7312f6ad56389a8ded4d747a7 |
| Size | 3.1 KB |
| Checksum | sha256:42a1110cb646ddd86ac21ce9532e7eb72c5474f7312f6ad56389a8ded4d747a7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:15:47 (UTC) | 1 | 3.1 KB | - |