Nextflow Registry | nf-core/sourcepredict@0.0.0-0c7146d

nf-core/sourcepredict @ 0.0.0-0c7146d

Classifies and predicts the origin of metagenomic samples

source tracking metagenomics machine learning

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @MeriamOs

Maintainers: @MeriamOs

Classifies and predicts the origin of metagenomic samples

Add the following snippet to your workflow script to include this module.

include { SOURCEPREDICT } from 'nf-core/sourcepredict'

MIT License

Process

`Name`	`SOURCEPREDICT`

Input 5 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`kraken_parse` file	Sink TAXID count table in csv format `*.csv`

`sources` file	Sources TAXID count table in csv format. Default can be downloaded from https://raw.githubusercontent.com/maxibor/sourcepredict/master/data/modern_gut_microbiomes_sources.csv `*.csv`

`labels` file	Labels for the sources table in csv format. Default can be downloaded from https://raw.githubusercontent.com/maxibor/sourcepredict/master/data/modern_gut_microbiomes_labels.csv `*.csv`

`taxa_sqlite` file	taxa.sqlite file downloaded with ete3 toolkit `taxa.sqlite`

`taxa_sqlite_traverse_pkl` file	taxa.sqlite.traverse.pkl file downloaded with ete3 toolkit `taxa.sqlite.traverse.pkl`

Output 4 channels

#1 report tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.sourcepredict.csv` file	Table containing the predicted proportion of each source in each sample `*.sourcepredict.csv`

#2 versions_python tuple

`${task.process}` string	The name of the process
`python` string	The name of the tool
`python -V \| sed "s/Python //g"` eval	The expression to obtain the version of the tool

#3 versions_sklearn tuple

`${task.process}` string	The name of the process
`sklearn` string	The name of the tool
`python -c "import sklearn; print(sklearn.__version__)"` eval	The expression to obtain the version of the tool

#4 versions_sourcepredict tuple

`${task.process}` string	The name of the process
`sourcepredict` string	The name of the tool
`python -c "import sourcepredict; print(sourcepredict.__version__)"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
sourcepredict	Classification and prediction of the origin of metagenomic samples.	https://github.com/maxibor/sourcepredict

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:15:46 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsourcepredict/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sourcepredict/blobs/sha256:31289fe77e93b3942b9cbafd904c6dd0566941472b9e30b207526b3964c427f5
Size	3.0 KB
Checksum	sha256:31289fe77e93b3942b9cbafd904c6dd0566941472b9e30b207526b3964c427f5
Downloads	1

Version	Date	Status	Downloads	Size	Diff